Misuzu Moritani is an introvert who has always had difficulty interacting with her classmates, quickly becoming flustered whenever someone tries to talk to her. Sometimes, she will use her ability to stop time for three minutes to escape troublesome social situations. One day, as Misuzu watches the suspended environment around her, she observes that her classmate, Haruka Murakami, is somehow able to move despite her temporal influence. From that moment on, Misuzu experiences new wonders as she explores more of the world she has long avoided; no matter where time may take her, Misuzu can count on Haruka to always be at her side.

Set in Tokyo, it's January 29, 2030. High-frequency resonance is observed in the vicinity of Tokyo, and the red fog rolls into the city. Those who hear the sound, humans and animals alike, pass out, losing consciousness. Everything shuts down in Tokyo, believing that the fog is carrying an unknown virus that causes an epidemic. However, six days later, after the incident, people wake up as if nothing happened. After that, Tokyo's sealed-off city sections gradually return to normal. However, since the high-frequency resonance, some bizarre events start to happen, and people find themselves being pulled deeper into more mysteries. Meanwhile, young people start to become aware of themselves and release their power hidden in their blood, discovering themselves as vessel of wisdom blood. Together, being led by something unknown, they meet, communicate, and face the unavoidable circle of fate, sacrificing their own lives. (Source: MAL News)

Unaired episode included with the Blu-ray box set.

Second year high school student Ichirou Satou has always been an average person—that is, until he runs into some not-so-average situations with his teacher, Kana The Demon Kojima. Kojima is Satou's Japanese language teacher with a reputation for being so ruthless that even school delinquents bow down to her. One fateful day, things escalate when Satou runs into Kojima in the restroom, leading them to share an intimate encounter that makes his imagination run wild for days after. Nande Koko ni Sensei ga? follows the daily life of Satou and his teacher as they continue to meet under similar conditions, growing ever closer with each encounter.