As tensions between the world of magic and Academy City continues to rise, Touma Kamijou and his hand of negation must face off against both esper and magician in order to protect the lives of those around him. Of course, he is not alone in his fight; whether by his side or out of sight, allies and enemies both old and new will enter the fray to help him. Toaru Majutsu no Index II continues the story of action and comedy, as the scale of Touma and his allies' battle grows ever larger. A conflict is slowly brewing on the horizon, and magic and science will cross paths once again in the war to come.

In the scientifically advanced Academy City, a miracle is about to occur: the completion of the world's first space elevator, Endymion. Meanwhile, a certain high school student, Touma Kamijou, and his companion Index are going about their daily lives when they encounter and befriend Arisa Meigo, a cheerful and ambitious singer. When strange occurrences begin taking place throughout the city, they lead to the discovery of an intricate plot surrounding Arisa and Endymion. Things only get more complicated when the Stiyl Magnus appears, signifying that the magical world is somehow involved too...

Touma Kamijou can't catch a break. After the invasion of Academy City, political tensions continue to rise as both the science and magic factions collide head on. It appears that Academy City intends to declare war against the Roman Catholic Church, consequently plunging the whole world into global warfare. Touma soon finds himself on the front lines once again, striving to protect his friends and allies. Toaru Majutsu no Index III serves as the last installment of the original franchise as Touma, Accelerator, and the true Level 0 Shiage Hamazura continue their separate journeys, leading up to the final act of the original light novel series.

Makoto Konno is in her last year of high school, but is having a hard time deciding what to do with her future. In between enduring the pressure of her teachers and killing time with her best friends, Makoto's life suddenly changes when she accidentally discovers that she is capable of literally leaping through time. Toki wo Kakeru Shoujo follows Makoto as she plays around with her newfound power. However, she soon learns the hard way that every choice has a consequence, and time is a lot more complicated than it may seem.