It has been 10 years since Heaven's Gate appeared in South America and Hell's Gate appeared in Japan, veiling the once familiar night sky with an oppressive skyscape. Their purposes unknown, these Gates are spaces in which the very laws of physics are ignored. With the appearance of the Gates emerged Contractors, who, in exchange for their humanity, are granted supernatural abilities. In the Japanese city surrounding Hell's Gate, Section 4 Chief Misaki Kirihara finds herself at odds with an infamous Contractor codenamed Hei. Called Black Reaper in the underground world, Hei, like his associates, undertakes missions for the mysterious and ruthless Syndicate while slowly peeling back the dark layers covering a nefarious plot that threatens the very existence of Contractors. From the mind of Tensai Okamura comes a sci-fi thriller taking the form of a subtle exposé on a war in which political positions and justice have no sway—a war waged exclusively in the shadows.

In the near future, augmented reality has become a key part of daily life. A gentle middle school girl named Yuuko Yasako Okonogi and her family have just moved to Daikoku City despite rumors of people disappearing. There, her grandmother, nicknamed Mega-baa, runs a shop called Megasia that specializes in illegal tools which interact with parts of the virtual world. Mega-baa also hosts an unofficial detective agency called Coil, a group of children around Yasako's age who find and handle corruption of the virtual world. Yasako gets involved with the group when Fumie Hashimoto, a playful member of Coil, helps rescue her cyberdog Densuke after getting trapped in virtual space while chasing a mysterious virus. Also investigating these corruptions and viruses is an abrasive hacker named Yuuko Amasawa, who the others take to calling Isako. Can Coil discover the truths behind the mysterious viruses and corruption, and if they can, at what cost?

Special two-part bonus video included on the Limited Deluxe Edition BD/DVD of the Detective Conan: Zero The Enforcer Movie.

The luscious hills of Koumi Island are one of many reasons tourists pay its shores a visit—a reason that comes second only to its scenic coral reefs and the legend of Anne Bonnie and Mary Read. The museum that houses the cutlass and pistol of the daring pirate duo does wonders for the small island's tourism. On a trip to the island, the famous Kogorou Mouri is joined by his daughter Ran, her best friend Sonoko Suzuki, the Detective Boys, and Conan Edogawa. Following a mix up at the hotel regarding their rooms, the group encounters treasure hunters and becomes acquainted with the island's treasure fever. Sent on a hunt of their very own, the Detective Boys scour the isle; while in far harsher waters, Conan discovers a murder. The police, following a clue from a recent robbery, arrive soon after, and Koumi is plunged into chaos. What follows is a mad dash by not only the treasure hunters but also the inhabitants of Koumi to secure Anne and Mary's long lost booty. All the while, however, Conan, Kogorou, and the police search for the one thing far greater than riches—justice.