Spirits are otherworldly entities with immense power, capable of creating spatial quakes whenever they appear. One way of dealing with them is through brute force and killing them... or making them fall in love and sealing their powers. Having sealed three Spirits, Shidou Itsuka continues his mission with Ratatoskr in locating more spirits and dating them, to ensure the world's safety from further destruction. However, this time around, their problems will not be limited to Spirits as a more imposing threat seems to have noticed their activities.

On the day of the Tanabata festival, Shidou Itsuka happens to meet the eerie Kurumi Tokisaki, who proceeds to ask him out on a date. Although nervous, Shidou accepts the offer. The two spend their time visiting to a planetarium, buying food at the festival, and trying out a mock wedding ceremony. Meanwhile, Shirou's friends—Tooka Yatogami, Yoshino, and Kotori Itsuka—are looking for him, while also enjoying the festival themselves. As Shidou spends the day with Kurumi, he begins to notice an unexpected softer side of her. He knows that Kurumi is infamously called the Worst Spirit, but the girl standing before him is a gentle soul. However, as the day draws to a close, Shirou finally begins to understand the truth behind it all.

In the distant future, humanity has been driven to near-extinction by giant beasts known as Klaxosaurs, forcing the surviving humans to take refuge in massive fortress cities called Plantations. Children raised here are trained to pilot giant mechas known as FranXX—the only weapons known to be effective against the Klaxosaurs—in boy-girl pairs. Bred for the sole purpose of piloting these machines, these children know nothing of the outside world and are only able to prove their existence by defending their race. Hiro, an aspiring FranXX pilot, has lost his motivation and self-confidence after failing an aptitude test. Skipping out on his class' graduation ceremony, Hiro retreats to a forest lake, where he encounters a mysterious girl with two horns growing out of her head. She introduces herself by her codename Zero Two, which is known to belong to an infamous FranXX pilot known as the Partner Killer. Before Hiro can digest the encounter, the Plantation is rocked by a sudden Klaxosaur attack. Zero Two engages the creature in her FranXX, but it is heavily damaged in the skirmish and crashes near Hiro. Finding her partner dead, Zero Two invites Hiro to pilot the mecha with her, and the duo easily defeats the Klaxosaur in the ensuing fight. With a new partner by his side, Hiro has been given a chance at redemption for his past failures, but at what cost?

It has been 10 years since Heaven's Gate appeared in South America and Hell's Gate appeared in Japan, veiling the once familiar night sky with an oppressive skyscape. Their purposes unknown, these Gates are spaces in which the very laws of physics are ignored. With the appearance of the Gates emerged Contractors, who, in exchange for their humanity, are granted supernatural abilities. In the Japanese city surrounding Hell's Gate, Section 4 Chief Misaki Kirihara finds herself at odds with an infamous Contractor codenamed Hei. Called Black Reaper in the underground world, Hei, like his associates, undertakes missions for the mysterious and ruthless Syndicate while slowly peeling back the dark layers covering a nefarious plot that threatens the very existence of Contractors. From the mind of Tensai Okamura comes a sci-fi thriller taking the form of a subtle exposé on a war in which political positions and justice have no sway—a war waged exclusively in the shadows.