A.D. 2034. It has been two years since Motoko Kusanagi left Section 9. Togusa is now the new leader of the team, that has considerably increased its appointed personnel. The expanded new Section 9 confronts a rash of complicated incidents, and investigations reveal that an ultra-wizard hacker named the Puppeteer is behind the entire series of events. In the midst of all, Batou, who was stalking the case on a separate track, encounters Motoko. She goes away after saying, Stay away from the Solid State Society. Batou is left with a doubt in his mind. Could Motoko be the Puppeteer? The series of intriguing incidents that Section 9 faces gradually link together almost artistically. Who is the Puppeteer? What will happen to Batou's relationship with Motoko? What is the full truth behind this carefully planned perfect crime? And what will the outcome be? Mysteries surround the Solid State Society... (Source: Production I.G.)

Noah's Ark—the latest in VR technology and a milestone of human innovation—is set for a showcase to Japan's privileged children. They have the honour of beginning a new revolution in gaming; however, their carefree fun is cut short when a company employee is found murdered, with his dying message pointing to a clue hidden within the Ark. Along with the Detective Boys and Ran Mouri, Conan Edogawa enters Noah's Ark to solve this mystery and ensure the perpetrator is caught. But once they're inside the Ark, it takes on a mind of its own, imprisoning them and the children within its worlds. To escape and bring the murderer to justice, Conan and company must navigate a simulated 19th century London and track down the infamous Jack the Ripper—with the lives of 50 innocent children depending on them.

Infected Digimon—digital monsters who have begun acting in a berserk manner and experiencing a bizarre increase in power—are invading the real world. While Maki Himekawa and Daigo Nishijima, agents of the mysterious Incorporated Administrative Agency, attempt to learn more about these disruptive appearances, most of the Chosen Children are busy preparing for Tsukishima General High School's summer festival. Mimi Tachikawa, having recently returned to Japan after living in the United States for years, struggles to find her footing among her classmates and fellow Chosen Children. Meanwhile, by throwing himself into his studies, Jou Kido has been deliberately avoiding all issues related to Digimon, causing his partner Gomamon to run away. Mimi and Jou's individual actions cause friction within the group even as the threat of infected Digimon still looms over them. Will the two resolve their personal conflicts in time to help their friends fight off the latest threat?

While the title suggests a story of simple, everyday school life, the contents are more the opposite. The setting is a strange school where you may see the principal wrestle a deer or a robot's arm hide a rollcake. However there are still normal stories, like making a card castle or taking a test you didn't study for.