Ever since her late mother took her to an aquarium when she was young, Tsukimi Kurashita has been obsessed with jellyfish, comparing their flowing tentacles to a princess's white dress. Now living with five other unemployed otaku women, 19-year-old Tsukimi spends her days as a social outcast dreaming of becoming an illustrator. However, her life changes forever when one day, a beautiful woman unexpectedly helps her save a jellyfish in a local pet store. From then on, the stranger—confident, fashionable, and the complete opposite of Tsukimi and her roommates—begins to regularly visit the girls' building. This trendy hipster, though appearing shallow at first, harbors some secrets of her own, starting with the fact that she isn't really a girl at all, but a wealthy male college student named Kuranosuke Koibuchi!

On Christmas Eve, Hiro Hirono runs into Miyako Miyamura, a frivolous girl who borrows his bicycle in order to chase down a purse thief. After Hiro finds his bicycle wrecked and Miyako unconscious, the two unexpectedly spend their Christmas Eve together, and when they discover they go to the same high school, their accidental relationship develops even further. This sparks the jealousy of Hiro's childhood friend Kei Shindou, whose pure approach to life catches the eye of Kyosuke Tsutsumi, a womanizing photographer searching for the perfect shot. Elsewhere, Renji Asou, a boy who dreams of being a girl's knight in shining armor, has a chance encounter with Kei's twin sister—the overly shy Chihiro Shindou, who spends her time reading alone—at an abandoned train station. The two quickly become friends and eventually decide to write a novel together. However, when Renji discovers Chihiro's secret, his childish ideals are put to the test. Guided by two mysterious adults, these youths' relationships intertwine in a heart-rending tale of love, rejection, acceptance, and memories.

Born from a cocoon in the village of Old Home, a young Haibane—a being with a halo and small gray wings—awakens to a world she does not understand without memories of her past. Named Rakka for the dream of falling she had while inside the cocoon, she soon becomes accustomed to life in the strange town. However, there are strict rules for the Haibane, such as being forbidden to leave the village or go near the walls surrounding it. These, along with mysterious disappearances of their kind on their Day of Flight, begin to unsettle Rakka and the others since they know almost nothing about their own kind. As Rakka and the other Haibane live their lives with no memories of the past, they try to break free from their former pain and ultimately find salvation.

Shinichirou Nakagami was living the life other boys from his grade could only dream of—staying under the same roof as prodigal student Hiromi Yuasa. However, the bright and cheerful Hiromi has been depressed and cold at home ever since her mother passed away. While he is the subject of the ignorant jealousy of his peers, rumors begin to spread when Shinichirou meets Noe Isurugi—a girl known for cursing classmates, curses which always end up becoming reality. Noe curses Shinichirou as well, but two pits are created when you curse someone, and her curse on Shinichirou comes back to bite her in the form of a raccoon to her beloved chicken, Raigomaru. Despite this, she does not shed a single tear; Noe had had her tears stolen. For Noe to be able to cry again, she would need the tears of another, and Shinichirou knows a person whose tears he wants to take away.