Yukiteru Amano is a shy middle schooler who regularly keeps track of what he does in his daily life by writing down all of his activities on his phone—a digital diary. Despite having no friends at school, Yukiteru is frequently seen talking to his supposedly imaginary friends Deus Ex Machina, the god of time and space; and Deus' servant, Mur Mur. One day, Yukiteru wakes up and discovers that certain events of his day are preemptively displayed on his cellphone. While initially dismissing it as a coincidence, he slowly realizes that the incidents written in his phone actually take place in the near future. After spending the day benefiting from this new asset, Yukiteru learns that his classmate Yuno Gasai possesses a similar diary. As the two team up to defeat an odd pursuer and head back to their respective homes, Deus Ex Machina explains that they—alongside 10 other contestants—have been drawn into a survival game whose victor will become the deity's successor. With no other options, Yukiteru and Yuno must use their cellphones—now called Future Diaries—to survive this unforgiving battle royale.

Tucked in the mountains near the elite Kunugigaoka Middle School lies a small derelict building that houses the delinquents and dropouts of Class 3-E. Looked down upon by their peers, the students in this class appear to have little hope in advancing their academic careers. That is, until the national government tasks them with eliminating the greatest threat to their planet: their new teacher. Having already destroyed the moon, the octopus-like professor—dubbed Koro-sensei—has now threatened to destroy the Earth by March of the following year. In light of their mission, the students have found that killing him is easier said than done. Not only can Koro-sensei move at speeds of up to Mach 20, but he can also resist almost every earthly weapon. Ironically, he also proves to be one of the best teachers Class 3-E has ever had. Training the class to excel in both their studies as students and skills as assassins, Koro-sensei is confident that his students' ingenuity and indomitable will could return them to the main campus. Through trial and error, Nagisa Shiota, as well as the other students of Class 3-E, must figure out Koro-sensei's weaknesses—and fast, for the very fate of the world depends upon it.

One year has passed since the Black Rebellion, a failed uprising against the Holy Britannian Empire led by the masked vigilante Zero, who is now missing. At a loss without their revolutionary leader, Area 11's resistance group—the Black Knights—find themselves too powerless to combat the brutality inflicted upon the Elevens by Britannia, which has increased significantly in order to crush any hope of a future revolt. Lelouch Lamperouge, having lost all memory of his double life, is living peacefully alongside his friends as a high school student at Ashford Academy. His former partner C.C., unable to accept this turn of events, takes it upon herself to remind him of his past purpose, hoping that the mastermind Zero will rise once again to finish what he started, in this thrilling conclusion to the series.

Ken Kaneki has finally come to accept the monstrous, flesh-craving part of himself that he has feared and despised for so long. After escaping captivity and torture, Kaneki joins Aogiri Tree—the very militant ghoul organization that had abducted him, leading his friends to question his true motive and loyalty. As tension between the government and the ghouls continues to rise, the Commission of Counter Ghoul, the government's specialized anti-ghoul agency, has intensified their efforts to completely purge Tokyo of ghouls. This threatens the transient peace of Kaneki's friends and former comrades—the ghouls at the Anteiku coffee shop. Aware of the dangerous situation, Kaneki faces several battles that puts his precious fleeting humanity on the line.