Iori Kitahara moves to the coastal town of Izu for his freshman year at its university, taking residence above Grand Blue, his uncle's scuba diving shop. Iori has high hopes and dreams about having the ideal college experience, but when he enters the shop he is sucked into the alcoholic activities of the carefree members of the Diving Club who frequent the place. Persuaded by upperclassmen Shinji Tokita and Ryuujirou Kotobuki, Iori reluctantly joins their bizarre party. His cousin Chisa Kotegawa later walks in and catches him in the act, earning Iori her utter disdain. Based on Kenji Inoue and Kimitake Yoshioka's popular comedy manga, Grand Blue follows Iori's misadventures with his eccentric new friends as he strives to realize his ideal college dream, while also learning how to scuba dive.

Equipped with his passion for diving and admiration for marine biology, university student Tsuneo Suzukawa tries his best to juggle several part-time jobs to earn enough money to study abroad. But one night, in a fateful accident, he meets a girl in a wheelchair, driving his current path into a detour. The girl, Kumiko—who prefers to be called Josee—initially comes off as rude. Tsuneo, however, is then convinced by Josee's grandmother to take on the paid job to be Josee's caretaker. Despite being annoyed with her bossy demeanor, Tsuneo sees the opportunity to save more funds to support his academic dream. Nonetheless, after putting up with Josee's behavior for some time, Tsuneo tries to quit, only to discover Josee's dreams of traversing the outside world—to experience a life free from her crippling condition. Changing his mind, Tsuneo decides to accompany Josee in exploring the wonders that the world has to offer. Through their time together, the two begin to realize that the traits that bind them may be vital toward fulfilling their respective aspirations.

Years ago, astronaut Byakuya left behind precious materials in the belief that his son, the scientifically-gifted Senkuu, would one day find them. In the present, the Kingdom of Science's Kohaku and Ginrou have infiltrated the harem of the Petrification Kingdom’s leader with the help of Amaryllis, a local girl. At first, their mission progresses without a hitch. Unfortunately, an error enacted by Kohaku and Ginrou leads Minister Ibara and the Island’s strongest warrior, Moz, to identify the intruding duo as enemies. Even worse, Moz tails Amaryllis when she returns to inform Senkuu of the news, discovering the scientist's secret hideout. However, Moz's agenda does not align with Ibara's—he wants to dethrone the minister and keep the petrification device for himself. If Senkuu plays his cards right, he could gain a powerful ally and win the war once and for all.

In a flooded town where the waters are ever-rising, an old man must constantly build new floors onto his home in order to keep dry. But when his favorite smoking pipe falls into the watery abyss beneath him, he dives into the depths of not only his house, but memories of years past. Tsumiki no Ie is a short film about the everlasting effect of time on one's life—how it can swallow the past entirely, and how one must learn to continue moving forward despite what has already happened.