In the year 2039, the drastic effects of global warming have caused sea levels to rise, resulting in major loss of land. To ensure humanity learns its lesson, a fleet of powerful warships equipped with advanced weaponry emerges, causing overwhelming defeat for naval forces throughout the world. Calling themselves the Fleet of Fog, each ship has a Mental Model, a humanoid avatar which represents the ship's heart, its Union Core. Each model has a different personality but all follow an unknown authority known as the Admiralty Code, who have implemented a blockade to prevent humans from traveling across the sea. Seventeen years after the blockade, Gunzou Chihaya, a National Marine Academy alumnus, stumbles upon I-401 and its Mental Model, Iona, who sides with mankind for unknown reasons. Utilizing this newfound hope of achieving peace for humanity, Gunzou and his friends form a group of privateers, known as the Blue Steel, as they set out on a dangerous journey.

A team of three magical girls known as Tres Magia protects the town where Utena Hiiragi lives. Like many others, Utena loves these magical girls who valiantly fight in the name of justice. One day, a mysterious black mascot character appears before Utena and grants her the opportunity of a lifetime: a chance to transform into a magical girl. However, the offer is not what it seems, as Utena has been recruited for an evil organization to fight the magical girls she has always admired. Utena is then forced to confront Tres Magia in battle; but instead of feeling remorse, she unexpectedly finds pleasure in inflicting pain on the magical girls. Completely giving in to her desires, Utena embraces her role as a villain, slowly transforming her adoration for magical girls into a new sadistic obsession.

The entire countryside comes to a halt midday to witness a rare solar eclipse that is rumored to allow the average person to see Mushi. Unable to avert their gaze, the air is full of awe and wonder—but those who know the Mushi are preparing for the eclipse's aftermath. Based on a prediction from Tanyuu Karibusa, the cursed recorder, Mushishi Ginko finds himself in a very unlucky farming village. Immediately following the solar eclipse, a strange black cloud begins to gather in the sky and blocks the sun once more. Suspecting it to be the work of a Mushi known as Hihami, Ginko seeks to liberate the village from perpetual darkness. However, it seems that not all of the villagers are eager to return to the light.

Poor Shinichirou Asano has the worst of luck. His parents abandoned him and ran off to Europe. If that isn't bad enough on its own, they barely left him any money to take care of himself. In order to pay rent and keep a roof over his head, he has to work. Unfortunately, he was just fired from his last job and as a high school student, he doesn't have many other prospects. One evening, he's attacked by a centipede monster on his way home. Shinichirou is saved by a mysterious girl with a bow and arrow, who he later discovers is Sakuya Shimazu, a beautiful student who attends his school. But when he later helps an injured girl, he discovers two things. First, the injured girl isn't human at all but rather a nekomata, a two-tailed demon cat. And second, Sakuya comes from a family of exorcists, who've protected humanity from rogue monsters and spirits for generations. Because Shinichirou was responsible for releasing the nekomata, Sakuya enlists his help in recapturing the demon, but that's just the beginning of Shinichirou's relationship with Sakuya. It turns out the Shimazu family needs a housekeeper and it just so happens that Shinichirou excels at cooking and likes to clean! It may not be his dream job, but if it pays the rent and puts food on the table...