Shidou Itsuka carries on with his quest for Ratatoskr in finding Spirits and trying to seal their powers, all while maintaining his relationships with the ones he had already sealed. Moreover, as new Spirits appear, he must undergo more complicated trials—all to put a stop to further disasters as he discovers more about the Spirits' origin.

On her way to school one day, Suzume Iwato stumbles upon Souta Munakata, a young man searching for abandoned areas. The high school girl directs Souta to a nearby ruin, but out of pure curiosity, she herself decides to head to the same destination. Once there, Suzume discovers an isolated door with a dreamlike universe lying beyond it—a place that she can see and feel, but not enter. A strange stone rests on the ground nearby, but it turns into a cat-like creature and scurries away when Suzume lifts it. Suddenly afraid, she heads back toward her school, not realizing that her act of leaving the door open will have consequences. With the keystone released, the evil within the other universe can now freely escape and wreak havoc throughout Japan. Intending to correct her dangerous mistake, Suzume joins Souta—whose true goal is to prevent evil from festering—in finding and locking all open doors before the country is destroyed.

After a brutal surprise attack by the forces of Quincy King Yhwach, the resident Reapers of the Soul Society lick their wounds and mourn their losses. Many of the surviving Soul Reaper captains train to battle without their Bankai, the ultimate technique wielded by the fiercest warriors. In the previous assault, Ichigo Kurosaki narrowly managed to help fend off Yhwach's fearsome wrath. However, to ultimately defeat his godly adversary and save his allies, Ichigo must now undergo severe training that will push him beyond his physical, emotional, and mental limits. Though Yhwach already holds the upper hand in this ongoing blood feud, he also successfully recruits Uryuu Ishida, Ichigo's close friend and rival, to be his successor. Yhwach strikes out once again at the weakened Soul Society, intent on finally obliterating his long-standing enemies. As Ichigo struggles to attain new power, the Soul Reaper captains fight for survival and borrowed time.

On the hot summer day of August 14, Shintarou Kisaragi is forced to leave his room for the first time in two years. While arguing with the cyber girl Ene who lives in his computer, Shintarou Kisaragi accidentally spills soda all over his keyboard. Though they try to find a replacement online, most stores are closed due to the Obon festival, leaving them with no other choice but to visit the local department store. Venturing outside makes Shintarou extremely anxious, but the thought of living without his computer is even worse. It's just his luck that on the day he finally goes out, he's caught in a terrifying hostage situation. Luckily, a group of teenagers with mysterious eye powers, who call themselves the Mekakushi Dan, assist Shintarou in resolving the situation. As a result, he is forced to join their group, along with Ene. Their abilities seem to be like pieces of a puzzle, connecting one another, and as each member's past is unveiled, the secret that ties them together is slowly brought to light.