Following the closure of the Laughing Man case, Section 9 is re-established by Japan's newly elected Prime Minister, Youko Kayabuki, to combat the persistent threat of cyber-terrorism. A group calling themselves The Individual Eleven has begun committing acts of terror across Japan. While Motoko Kusanagi, Daisuke Aramaki, Batou, and the other members of Section 9 investigate this new menace, the Japanese government faces a separate crisis, as foreign refugees displaced by the Third World War seek asylum in Japan. But as the members of the special-ops team continually encounter Gouda Kazundo—a leading member of the Cabinet Intelligence Service—in their hunt, they begin to suspect that he may be involved, and that the events of the refugee crisis and The Individual Eleven may be more connected than they realize...

Tachikomatic Days is a series of comedic shorts attached to the end of every episode of Ghost in the Shell: Stand Alone Complex. The shorts feature the antics of the Tachikoma think tanks of Section 9 and usually involve plot points. The average short time is a little over a minute.

Short 3D CG Specials included in the Blu-rays of the Ghost in the Shell: Arise movies.

In the not so distant future, mankind has advanced to a state where complete body transplants from flesh to machine is possible. This allows for great increases in both physical and cybernetic prowess and blurring the lines between the two worlds. However, criminals can also make full use of such technology, leading to new and sometimes, very dangerous crimes. In response to such innovative new methods, the Japanese Government has established Section 9, an independently operating police unit which deals with such highly sensitive crimes. Led by Daisuke Aramaki and Motoko Kusanagi, Section 9 deals with such crimes over the entire social spectrum, usually with success. However, when faced with a new A level hacker nicknamed The Laughing Man, the team is thrown into a dangerous cat and mouse game, following the hacker's trail as it leaves its mark on Japan.