In the year 5053, French aristocrats Viscount Albert de Morcerf and Baron Franz d'Epinay attend the festival of Carnival on the moon city of Luna. While Franz is just looking to have fun, Albert is seeking something more to fill his life—but he finds more than he bargained for in The Count of Monte Cristo, a mysterious and charming self-made nobleman who meets his gaze during an opera performance. Through a few twists and turns, Albert befriends the Count and introduces him into French society. The Count, however, has more on his mind than just friendship; he plots to finally unleash his vengeance on those who wronged him years earlier. Gankutsuou follows Albert and the Count's intertwined destinies and the ultimate price paid for enacting revenge.

With Major Motoko Kusanagi missing, Section 9's Batou is assigned to investigate a string of gruesome murders—seemingly at the hands of faulty gynoids, or sex robots. But when a faulty gynoid leaves Batou a cryptic message, he begins to question the cause of their malfunctions. Suspicions of politically motivated murder and an illegal ghost quickly crop up, drawing Batou and his partner Togusa into a perilous web of conspiracy. As their investigation goes on, the line between man and machine continues to blur, and reality and perception become indistinguishable. Confronting strange and dangerous foes, Batou and Togusa explore a futuristic world filled with machines and living dolls but utterly devoid of humanity.

A.D. 2034. It has been two years since Motoko Kusanagi left Section 9. Togusa is now the new leader of the team, that has considerably increased its appointed personnel. The expanded new Section 9 confronts a rash of complicated incidents, and investigations reveal that an ultra-wizard hacker named the Puppeteer is behind the entire series of events. In the midst of all, Batou, who was stalking the case on a separate track, encounters Motoko. She goes away after saying, Stay away from the Solid State Society. Batou is left with a doubt in his mind. Could Motoko be the Puppeteer? The series of intriguing incidents that Section 9 faces gradually link together almost artistically. Who is the Puppeteer? What will happen to Batou's relationship with Motoko? What is the full truth behind this carefully planned perfect crime? And what will the outcome be? Mysteries surround the Solid State Society... (Source: Production I.G.)