Shun Hashimoto is an openly gay aspiring novelist living in Okinawa who was abandoned by his parents after coming out to them. Mio Chibana is a reserved, orphaned high school student, often found spending his time by the sea. One day, the two meet on the beach, and Shun is instantly captivated by Mio. The days fly by as they slowly begin to grow closer until Mio suddenly announces that he has to leave for the mainland. Three years pass before a 20-year-old Mio returns to Okinawa to confess his love to Shun. However, in those three years, Shun's life has changed. Will he be able to accept Mio's feelings and make such a commitment?

With World War II right around the corner, intelligence on other countries' social and economic situation has become a valuable asset. As a result, Japan has established a new spy organization known as the D Agency to obtain this weapon. Under the command of Lieutenant Colonel Yuuki, eight agents have been assigned to infiltrate and observe some of the most powerful countries, reporting on any developments associated with the war. In order to carry out these dangerous tasks, these men have trained their bodies to survive in extreme conditions and studied numerous fields such as communications and languages. However, their greatest strength lies in their ability to manipulate people in order to obtain the information necessary to give their nation the upper hand.

With Major Motoko Kusanagi missing, Section 9's Batou is assigned to investigate a string of gruesome murders—seemingly at the hands of faulty gynoids, or sex robots. But when a faulty gynoid leaves Batou a cryptic message, he begins to question the cause of their malfunctions. Suspicions of politically motivated murder and an illegal ghost quickly crop up, drawing Batou and his partner Togusa into a perilous web of conspiracy. As their investigation goes on, the line between man and machine continues to blur, and reality and perception become indistinguishable. Confronting strange and dangerous foes, Batou and Togusa explore a futuristic world filled with machines and living dolls but utterly devoid of humanity.

Kind-hearted Himuro-kun is unfortunate: when in deep concentration, stressed, or flustered, he involuntarily creates blizzard conditions for himself and anyone in his vicinity. During one such incident on the first day of his new job, Himuro-kun encounters the beautiful Fuyutsuki-san, who helps him break out of his nerve-induced ice. As it turns out, Fuyutsuki-san is his new coworker. At the office, the cool-headed Fuyutsuki-san offers simple and rational solutions to Himuro-kun's icy dilemmas—everything from helping him garden without freezing his plants to ensuring he does not melt during their tropical work retreat. Every time Fuyutsuki-san does something kind for him, the tempest of emotions he experiences inside embarrassingly manifests on the outside. As a result of the frequent snowstorms, Himuro-kun's feelings for Fuyutsuki-san are impossible to hide. Even though Fuyutsuki-san is unfamiliar with love, Himuro-kun remains determined to repay her kindness and warm her heart in any way he can.